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| Registros recuperados : 44 | |
| 2. |  | CARVALHO, F. M.; SOUZA, R. C.; BARCELLOS, F. G.; HUNGRIA, M.; VASCONCELOS, A. T. R. Genomic and evolutionary comparisons of diazotrophic and pathogenic bacteria of the order Rhizobiales. BMC Microbiology, London, v. 10, n. 37, p. 1-15, Feb. 2010.| Biblioteca(s): Embrapa Soja. |
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| 8. | | CARVALHO, F. M.; GOMES, D. F.; ORTIZ, M.; ALMEIDA, L. G.; SOUSA, R. C.; VASCONCELOS, A. T. R.; HUNGRIA, M. Genomic panorama, focused on the symbiotic context, of bradyrhizobium elkanii strains semia 587, semia 5019 and usda 76t (t é sobrescrito). In: REUNIÃO LATINOAMERICANA DE RIZOBIOLOGIA - RELAR, 27., 2016, Londrina. Fortalecendo as parcerias Sul-Sul: anais. Curitiba: SBCS-NEPAR, 2016. p. 178. Editores: Mariangela Hungria, Douglas Fabiano Gomes, Arnaldo Colozzi Filho.| Biblioteca(s): Embrapa Soja. |
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| 9. | | SIQUEIRA, A. F.; NAKATANI, A. S.; VASCONCELOS, A. T. R. de; ALMEIDA, L. G. P. de; HUNGRIA, M. Anotação Genômica de Bradyrhizobium japonicum estirpes CPAC 15 e CPAC 7: Resultados parciais e sua importância para a cultura de soja. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 30.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 14.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 12.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 9.; SIMPÓSIO SOBRE SELÊNIO NO BRASIL, 1., 2012, Maceió. A responsabilidade socioambiental da pesquisa agrícola: anais. Viçosa: SBCS, 2012. 3 p. Trab. 1190. 1 CD-ROM. Fertbio.| Biblioteca(s): Embrapa Soja. |
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| 10. | | SOUZA, R. C. de; CANTÃO, M. E.; NOGUEIRA, M. A.; VASCONCELOS, A. T. R.; NICOLAS, M. F.; HUNGRIA, M. Biodiversidade de procariotos em solo sob plantio direto e plantio convencional em rotação ou sucessão de culturas. In: CONGRESSO BRASILEIRO DE MICROBILOGIA, 26.; SIMPÓSIO INTERNACIONAL DE BACTÉRIAS LÁTICAS; ENCONTRO NACIONAL DE PROFESSORES DE MICROBIOLOGIA; SIMPÓSIO DE COLEÇÕES DE CULTURAS, 4., 2011, Foz do Iguaçu. Anais... São Paulo: SBM, 2011. Resumo, 365-1.| Biblioteca(s): Embrapa Soja. |
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| 12. | | HUNGRIA, M.; NICOLAS, M. F.; GUIMARAES, C. T.; JARDIM, S. N.; GOMES, E. A.; VASCONCELOS, A. T. R. de. Tolerance to stress and environmental adaptability of Chromobacterium violaceum. Genetics and Molecular Research, Ribeirão Preto, v. 3, n. 1, p. 102-116, 2004.| Biblioteca(s): Embrapa Milho e Sorgo. |
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| 13. | | DELAMUTA, J. R. M.; GOMES, D. F.; RIBEIRO, R. A.; CHUEIRE, L. M. O.; SOUZA, R. C.; ALMEIDA, L. G. P.; VASCONCELOS, A. T. R.; HUNGRIA, M. Genome sequence of Bradyrhizobium tropiciagri Strain CNPSo 1112T , isolated from a root nodule of Neonotonia wightii. Genome Announcements, v. 3, n. 6, e01482-15, Nov./Dec. 2015.| Biblioteca(s): Embrapa Soja. |
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| 14. | | HELENE, L. C. F.; GOMES, D. F.; DELAMUTA, J. R. M.; RIBEIRO, R. A.; SOUZA, R. C.; ALMEIDA, L. G. P.; VASCONCELOS, A. T. R.; HUNGRIA, M. Genome sequence of Bradyrhizobium viridifuturi strain SEMIA 690T, a nitrogen-fixing symbiont of Centrosema pubescens. Genome Announcements, v. 3, n. 6, e01481-15, Nov./Dec. 2015.| Biblioteca(s): Embrapa Soja. |
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| 15. | | GODOY, L. P.; VASCONCELOS, A. T. R.; CHUEIRE, L. M. O.; SOUZA, R. C.; NICOLÁS, M. F.; BARCELLOS, F. G.; HUNGRIA, M. Genomic panorama of Bradyrhizobium japonicum CPAC 15, a commercial inoculant strain largely established in Brazilian soils and belonging to the same serogroup as USDA 123. Soil Biology & Biochemistry, v. 40, n. 11, p. 2743-2753, 2008.| Biblioteca(s): Embrapa Soja. |
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| 16. | | BABUJIA, L. C.; SILVA, A. P.; NAKATANI, A. S.; CANTAO, M. E.; VASCONCELOS, A. T. R.; VISENTAINER, J. V.; HUNGRIA, M. Impact of long-term cropping of glyphosate-resistant transgenic soybean [Glycine max (L.) Merr.] on soil microbiome. Transgenic Research, Feb., p.1-6, 2016.| Biblioteca(s): Embrapa Soja; Embrapa Suínos e Aves. |
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| 17. | | MEDEIROS, J. D.; CANTAO, M. E.; CESAR, D. E.; NICOLÁS, M. F.; DINIZ, C. G.; SILVA, V. L.; VASCONCELOS, A. T. R. de; COELHO, C. M. Comparative metagenome of a stream impacted by the urbanization phenomenon. Brazilian Journal of Microbiology, São Paulo, SP, v. 47, n. 4, p. 835-845, 2016.| Biblioteca(s): Embrapa Suínos e Aves. |
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| 18. | | PINTO, F. G. da S.; CHUEIRE, L. M. de O.; VASCONCELOS, A. T. R.; NICOLÁS, M. F.; GONZAGA, L.; SOUZA, R. C.; HUNGRIA, M. Panorama genômico e bioprospecção de genes de Rhizobium tropici estirpe PRF 81 (SEMIA 4080) utilizada em inoculantes comerciais para a cultura do feijoeiro. In: REUNIÃO BRASILEIRA DE FERTILIDADE DO SOLO E NUTRIÇÃO DE PLANTAS, 27.; REUNIÃO BRASILEIRA SOBRE MICORRIZAS, 11.; SIMPÓSIO BRASILEIRO DE MICROBIOLOGIA DO SOLO, 9.; REUNIÃO BRASILEIRA DE BIOLOGIA DO SOLO, 6., 2006, Bonito, MS. A busca das raízes: anais. Dourados: Embrapa Agropecuária Oeste, 2006. 1 CD-ROM. (Embrapa Agropecuária Oeste. Documentos, 82).| Biblioteca(s): Embrapa Soja. |
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| 19. | | GODOY, L. P.; CHUEIRE, L. M. de O.; BARCELLOS, F. G.; VASCONCELOS, A. T. R.; GONZAGA, L. de P.; NICOLÁS, M. F.; HUNGRIA, M. Panorama genômico da estirpe de Bradyrhizobium japonicum CPAC 15, recomendada para o uso em inoculantes comerciais para a cultura da soja. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 2005, Londrina. Resumos expandidos. Londrina: Embrapa Soja, 2005. p. 98-103. (Embrapa Soja. Documentos, 268).| Biblioteca(s): Embrapa Soja. |
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| 20. | | GODOY, L. P.; CHUEIRE, L. M. de O.; BARCELLOS, F. G.; VASCONCELOS, A. T. R.; GONZAGA, L. de P.; NICOLÁS, M. F; SOUZA, R. C.; HUNGRIA, M. Panorama genômico da estirpe de Bradyrhizobium japonicum CPAC 15, recomendada para o uso em inoculantes comerciais para a cultura da soja. In: JORNADA ACADÊMICA DA EMBRAPA SOJA, 2., 2006, Londrina. Resumos expandidos. Londrina: Embrapa Soja, 2006. p. 156-161. (Embrapa Soja. Documentos, 276).| Biblioteca(s): Embrapa Soja. |
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| Registros recuperados : 44 | |
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 | Acesso ao texto completo restrito à biblioteca da Embrapa Soja. Para informações adicionais entre em contato com valeria.cardoso@embrapa.br. |
Registro Completo
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Biblioteca(s): |
Embrapa Soja. |
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Data corrente: |
11/02/2009 |
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Data da última atualização: |
03/08/2017 |
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Tipo da produção científica: |
Artigo em Periódico Indexado |
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Circulação/Nível: |
Internacional - A |
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Autoria: |
GODOY, L. P.; VASCONCELOS, A. T. R.; CHUEIRE, L. M. O.; SOUZA, R. C.; NICOLÁS, M. F.; BARCELLOS, F. G.; HUNGRIA, M. |
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Afiliação: |
Leandro Pereira Godoy, CNPSo/UEL; Ana Tereza Ribeiro Vasconcelos Laboratório Nacional de Computação Científica Petrópolis RJ; Ligia Maria Oliveira Chueire, CNPSo; Rangel Celso Souza Laboratório Nacional de Computação Científica Petrópolis RJ; Marisa Fabiana Nicolás Laboratório Nacional de Computação Científica Petrópolis RJ; Fernando Gomes Barcellos, CNPS; Mariangela Hungria, CNPSo. |
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Título: |
Genomic panorama of Bradyrhizobium japonicum CPAC 15, a commercial inoculant strain largely established in Brazilian soils and belonging to the same serogroup as USDA 123. |
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Ano de publicação: |
2008 |
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Fonte/Imprenta: |
Soil Biology & Biochemistry, v. 40, n. 11, p. 2743-2753, 2008. |
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Idioma: |
Inglês |
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Conteúdo: |
Of the many genomes of prokaryotes that have been sequenced, most are pathogenic organisms and very few of agriculturally beneficial bacteria. Soybean, the most important cash crop in Brazil, can provide its need for nitrogen through a symbiosis with exotic strains of bradyrhizobia. Bradyrhizobium japonicum strain CPAC 15 (equates to SEMIA 5079, the same serogroup as USDA 123), which is a highly competitive commercial strain applied to soybean crops since the early 1990s, is now established on several millions of hectares. As financial resources for sequencing genomes are still very limited in developing countries, a panoramic genomic view of CPAC 15 was generated. A total of 4328 shotgun reads resulted in 2,046,740 bp with a phred score_ 20; the assemblage resulted in 1106 phrap contigs scattered by 69 scaffolds and 966 isolated contigs, with an average of 2.5 reads per contig, covering approximately 13% of the genome. Annotation identified 1371 coding DNA sequences (CDSs), 53% with putative known functions, 23% encoding conserved hypothetical and 24% hypothetical genes, representing about 16% of the estimated putative genes. Several comparisons - on COG and KEGG databases, tRNAs, transposases, Gþ C content of CPAC 15 with the complete genome of B. japonicum strain USDA 110 indicated a successful coverage of the whole genome. However, the two strains were surprisingly different, as at least 35% of the CDS of CPAC 15 shows higher similarity to microorganisms other than strain USDA 110. Several new putative genes and others with low similarity to USDA 110, were identified. These were related to nodulation, interaction with the host plant and adaptation, e.g., nodB, nodW, ndvA, effector nopP, genes of secretion systems, transporters and environmentally related genes. MenosOf the many genomes of prokaryotes that have been sequenced, most are pathogenic organisms and very few of agriculturally beneficial bacteria. Soybean, the most important cash crop in Brazil, can provide its need for nitrogen through a symbiosis with exotic strains of bradyrhizobia. Bradyrhizobium japonicum strain CPAC 15 (equates to SEMIA 5079, the same serogroup as USDA 123), which is a highly competitive commercial strain applied to soybean crops since the early 1990s, is now established on several millions of hectares. As financial resources for sequencing genomes are still very limited in developing countries, a panoramic genomic view of CPAC 15 was generated. A total of 4328 shotgun reads resulted in 2,046,740 bp with a phred score_ 20; the assemblage resulted in 1106 phrap contigs scattered by 69 scaffolds and 966 isolated contigs, with an average of 2.5 reads per contig, covering approximately 13% of the genome. Annotation identified 1371 coding DNA sequences (CDSs), 53% with putative known functions, 23% encoding conserved hypothetical and 24% hypothetical genes, representing about 16% of the estimated putative genes. Several comparisons - on COG and KEGG databases, tRNAs, transposases, Gþ C content of CPAC 15 with the complete genome of B. japonicum strain USDA 110 indicated a successful coverage of the whole genome. However, the two strains were surprisingly different, as at least 35% of the CDS of CPAC 15 shows higher similarity to microorganisms other than strai... Mostrar Tudo |
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100 1 $aGODOY, L. P.
245 $aGenomic panorama of Bradyrhizobium japonicum CPAC 15, a commercial inoculant strain largely established in Brazilian soils and belonging to the same serogroup as USDA 123.
260 $c2008
520 $aOf the many genomes of prokaryotes that have been sequenced, most are pathogenic organisms and very few of agriculturally beneficial bacteria. Soybean, the most important cash crop in Brazil, can provide its need for nitrogen through a symbiosis with exotic strains of bradyrhizobia. Bradyrhizobium japonicum strain CPAC 15 (equates to SEMIA 5079, the same serogroup as USDA 123), which is a highly competitive commercial strain applied to soybean crops since the early 1990s, is now established on several millions of hectares. As financial resources for sequencing genomes are still very limited in developing countries, a panoramic genomic view of CPAC 15 was generated. A total of 4328 shotgun reads resulted in 2,046,740 bp with a phred score_ 20; the assemblage resulted in 1106 phrap contigs scattered by 69 scaffolds and 966 isolated contigs, with an average of 2.5 reads per contig, covering approximately 13% of the genome. Annotation identified 1371 coding DNA sequences (CDSs), 53% with putative known functions, 23% encoding conserved hypothetical and 24% hypothetical genes, representing about 16% of the estimated putative genes. Several comparisons - on COG and KEGG databases, tRNAs, transposases, Gþ C content of CPAC 15 with the complete genome of B. japonicum strain USDA 110 indicated a successful coverage of the whole genome. However, the two strains were surprisingly different, as at least 35% of the CDS of CPAC 15 shows higher similarity to microorganisms other than strain USDA 110. Several new putative genes and others with low similarity to USDA 110, were identified. These were related to nodulation, interaction with the host plant and adaptation, e.g., nodB, nodW, ndvA, effector nopP, genes of secretion systems, transporters and environmentally related genes.
650 $aSolo
700 1 $aVASCONCELOS, A. T. R.
700 1 $aCHUEIRE, L. M. O.
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700 1 $aBARCELLOS, F. G.
700 1 $aHUNGRIA, M.
773 $tSoil Biology & Biochemistry$gv. 40, n. 11, p. 2743-2753, 2008.
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